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BMCBI
2007
179views more  BMCBI 2007»
15 years 1 months ago
Gene selection with multiple ordering criteria
Background: A microarray study may select different differentially expressed gene sets because of different selection criteria. For example, the fold-change and p-value are two co...
James J. Chen, Chen-An Tsai, ShengLi Tzeng, Chun-H...
150
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BMCBI
2011
14 years 4 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng
BMCBI
2005
110views more  BMCBI 2005»
15 years 27 days ago
Considerations when using the significance analysis of microarrays (SAM) algorithm
Background: Users of microarray technology typically strive to use universally acceptable data analysis strategies to determine significant expression changes in their experiments...
Ola Larsson, Claes Wahlestedt, James A. Timmons
JCB
2007
136views more  JCB 2007»
15 years 27 days ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
ICASSP
2010
IEEE
15 years 1 months ago
Structuring a gene network using a multiresolution independence test
In order to structure a gene network, a score-based approach is often used. A score-based approach, however, is problematic because by assuming a probability distribution, one is ...
Takayuki Yamamoto, Tetsuya Takiguchi, Yasuo Ariki