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» Extracting Ontologies from Relational Databases
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BMCBI
2008
116views more  BMCBI 2008»
14 years 10 months ago
Gene Ontology annotations: what they mean and where they come from
To address the challenges of information integration and retrieval, the computational genomics community increasingly has come to rely on the methodology of creating annotations o...
David P. Hill, Barry Smith, Monica S. McAndrews-Hi...
BMCBI
2004
110views more  BMCBI 2004»
14 years 9 months ago
Tools for loading MEDLINE into a local relational database
Background: Researchers who use MEDLINE for text mining, information extraction, or natural language processing may benefit from having a copy of MEDLINE that they can manage loca...
Diane E. Oliver, Gaurav Bhalotia, Ariel S. Schwart...
BMCBI
2008
242views more  BMCBI 2008»
14 years 10 months ago
annot8r: GO, EC and KEGG annotation of EST datasets
Background: The expressed sequence tag (EST) methodology is an attractive option for the generation of sequence data for species for which no completely sequenced genome is availa...
Ralf Schmid, Mark L. Blaxter
ESWS
2009
Springer
15 years 4 months ago
Towards Linguistically Grounded Ontologies
Abstract. In this paper we argue why it is necessary to associate linguistic information with ontologies and why more expressive models, beyond RDFS, OWL and SKOS, are needed to ca...
Paul Buitelaar, Philipp Cimiano, Peter Haase, Mich...
BMCBI
2008
158views more  BMCBI 2008»
14 years 10 months ago
Discovering gene annotations in biomedical text databases
Currently, most of the discovered biological and biomedical knowledge is available as textual data in scientific papers. And, locating and curating information about a genomic enti...
Ali Cakmak, Gultekin Özsoyoglu