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» Extracting Sequences from the Web
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BMCBI
2010
105views more  BMCBI 2010»
14 years 10 months ago
Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement
Background: The Medium-chain Dehydrogenases/Reductases (MDR) form a protein superfamily whose size and complexity defeats traditional means of subclassification; it currently has ...
Joel Hedlund, Hans Jörnvall, Bengt Persson
BMCBI
2007
151views more  BMCBI 2007»
14 years 10 months ago
Identification of hot regions in protein-protein interactions by sequential pattern mining
Background: Identification of protein interacting sites is an important task in computational molecular biology. As more and more protein sequences are deposited without available...
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih...
NAR
2006
170views more  NAR 2006»
14 years 10 months ago
The UCSC Genome Browser Database: update 2006
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major m...
Angela S. Hinrichs, Donna Karolchik, Robert Baerts...
BMCBI
2004
106views more  BMCBI 2004»
14 years 10 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...
WWW
2006
ACM
15 years 10 months ago
Searching with context
Contextual search refers to proactively capturing the information need of a user by automatically augmenting the user query with information extracted from the search context; for...
Reiner Kraft, Chi-Chao Chang, Farzin Maghoul, Ravi...