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» Extracting active pathways from gene expression data
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BMCBI
2006
126views more  BMCBI 2006»
15 years 16 days ago
A joint model of regulatory and metabolic networks
Background: Gene regulation and metabolic reactions are two primary activities of life. Although many works have been dedicated to study each system, the coupling between them is ...
Chen-Hsiang Yeang, Martin Vingron
125
Voted
ECCB
2005
IEEE
15 years 6 months ago
A query language for biological networks
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
Ulf Leser
103
Voted
MMAS
2010
Springer
14 years 7 months ago
Clustering and Classification through Normalizing Flows in Feature Space
A unified variational methodology is developed for classification and clustering problems, and tested in the classification of tumors from gene expression data. It is based on flu...
J. P. Agnelli, M. Cadeiras, E. G. Tabak, C. V. Tur...
126
Voted
BMCBI
2007
176views more  BMCBI 2007»
15 years 18 days ago
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
Background: Information resources on the World Wide Web play an indispensable role in modern biology. But integrating data from multiple sources is often encumbered by the need to...
J. Christopher Bare, Paul T. Shannon, Amy K. Schmi...
BMCBI
2008
136views more  BMCBI 2008»
15 years 18 days ago
GPAT: Retrieval of genomic annotation from large genomic position datasets
Background: Recent genome wide transcription factor binding site or chromatin modification mapping analysis techniques, such as chromatin immunoprecipitation (ChIP) linked to DNA ...
Arnaud Krebs, Mattia Frontini, Làszlò...