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» Extracting active pathways from gene expression data
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BMCBI
2005
151views more  BMCBI 2005»
14 years 10 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
RECOMB
2005
Springer
15 years 10 months ago
Modeling the Combinatorial Functions of Multiple Transcription Factors
A considerable fraction of yeast gene promoters are bound by multiple transcription factors. To study the combinatorial interactions of multiple transcription factors is thus impor...
Chen-Hsiang Yeang, Tommi Jaakkola
ICML
2004
IEEE
15 years 11 months ago
A needle in a haystack: local one-class optimization
This paper addresses the problem of finding a small and coherent subset of points in a given data. This problem, sometimes referred to as one-class or set covering, requires to fi...
Koby Crammer, Gal Chechik
BMCBI
2006
98views more  BMCBI 2006»
14 years 10 months ago
Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation
Background: Publicly accessible EST libraries contain valuable information that can be utilized for studies of tissue-specific gene expression and processing of individual genes. ...
Donglin Liu, Joel H. Graber
BMCBI
2010
155views more  BMCBI 2010»
14 years 10 months ago
FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases
Background: Whole genome association studies using highly dense single nucleotide polymorphisms (SNPs) are a set of methods to identify DNA markers associated with variation in a ...
Stephen J. Goodswen, Cedric Gondro, Nathan S. Wats...