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» Extraction of informative genes from microarray data
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127
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BMCBI
2008
115views more  BMCBI 2008»
15 years 3 months ago
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
Background: Currently, clustering with some form of correlation coefficient as the gene similarity metric has become a popular method for profiling genomic data. The Pearson corre...
Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung S...
136
Voted
BMCBI
2007
148views more  BMCBI 2007»
15 years 3 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole
ISMDA
2005
Springer
15 years 9 months ago
Relevance, Redundancy and Differential Prioritization in Feature Selection for Multiclass Gene Expression Data
The large number of genes in microarray data makes feature selection techniques more crucial than ever. From various ranking-based filter procedures to classifier-based wrapper tec...
Chia Huey Ooi, Madhu Chetty, Shyh Wei Teng
102
Voted
ACL
2004
15 years 5 months ago
Extracting Regulatory Gene Expression Networks From Pubmed
We present an approach using syntactosemantic rules for the extraction of relational information from biomedical abstracts. The results show that by overcoming the hurdle of techn...
Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitz...
138
Voted
JCB
2007
130views more  JCB 2007»
15 years 3 months ago
Bayesian Inference of MicroRNA Targets from Sequence and Expression Data
MicroRNAs (miRNAs) regulate a large proportion of mammalian genes by hybridizing to targeted messenger RNAs (mRNAs) and down-regulating their translation into protein. Although mu...
Jim C. Huang, Quaid Morris, Brendan J. Frey