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» Extraction of informative genes from microarray data
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NAR
2010
123views more  NAR 2010»
14 years 10 months ago
Xenbase: gene expression and improved integration
Xenbase (www.xenbase.org), the model organism database for Xenopus laevis and X. (Silurana) tropicalis, is the principal centralized resource of genomic, development data and comm...
Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ch...
WABI
2010
Springer
177views Bioinformatics» more  WABI 2010»
15 years 2 months ago
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data
In this paper we present a novel expectation-maximization algorithm for inference of alternative splicing isoform frequencies from high-throughput transcriptome sequencing (RNA-Seq...
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Al...
BIBM
2008
IEEE
217views Bioinformatics» more  BIBM 2008»
15 years 10 months ago
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction
The study of gene function is critical in various genomic and proteomic fields. Due to the availability of tremendous amounts of different types of protein data, integrating thes...
Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon ...
134
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TAL
2010
Springer
15 years 2 months ago
Portable Extraction of Partially Structured Facts from the Web
A novel fact extraction task is defined to fill a gap between current information retrieval and information extraction technologies. It is shown that it is possible to extract usef...
Andrew Salway, Liadh Kelly, Inguna Skadina, Gareth...
176
Voted
BMCBI
2010
179views more  BMCBI 2010»
14 years 11 months ago
Circadian signatures in rat liver: from gene expression to pathways
Background: Circadian rhythms are 24 hour oscillations in many behavioural, physiological, cellular and molecular processes that are controlled by an endogenous clock which is ent...
Meric A. Ovacik, Siddharth Sukumaran, Richard R. A...