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RECOMB
2010
Springer
15 years 11 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
BMCBI
2007
134views more  BMCBI 2007»
15 years 4 months ago
Benchmarking natural-language parsers for biological applications using dependency graphs
Background: Interest is growing in the application of syntactic parsers to natural language processing problems in biology, but assessing their performance is difficult because di...
Andrew B. Clegg, Adrian J. Shepherd
CIDR
2009
129views Algorithms» more  CIDR 2009»
15 years 5 months ago
Extracting and Querying a Comprehensive Web Database
Recent research in domain-independent information extraction holds the promise of an automatically-constructed structured database derived from the Web. A query system based on th...
Michael J. Cafarella
KDD
2009
ACM
269views Data Mining» more  KDD 2009»
16 years 5 months ago
Extracting discriminative concepts for domain adaptation in text mining
One common predictive modeling challenge occurs in text mining problems is that the training data and the operational (testing) data are drawn from different underlying distributi...
Bo Chen, Wai Lam, Ivor Tsang, Tak-Lam Wong
COLING
2000
15 years 6 months ago
Corpus-dependent Association Thesauri for Information Retrieval
This paper presents a method for automatically generating an association thesaurus from a text corpus, and demonstrates its application to information retrieval. The thesaurus gen...
Hiroyuki Kaji, Yasutsugu Morimoto, Toshiko Aizono,...