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» Extraction of informative genes from microarray data
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BMCBI
2006
81views more  BMCBI 2006»
15 years 3 months ago
A fisheye viewer for microarray-based gene expression data
Background: Microarray has been widely used to measure the relative amounts of every mRNA transcript from the genome in a single scan. Biologists have been accustomed to reading t...
Min Wu, Cheng Thao, Xiangming Mu, Ethan V. Munson
123
Voted
LREC
2008
166views Education» more  LREC 2008»
15 years 4 months ago
KnoFusius: a New Knowledge Fusion System for Interpretation of Gene Expression Data
This paper introduces a new architecture that aims at combining molecular biology data with information automatically extracted from scientific literature (using text mining techn...
Pavel Smrz
130
Voted
RECOMB
2007
Springer
16 years 3 months ago
A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements
Abstract. An important problem in biology is to understand correspondences between mRNA microarray levels and mass spectrometry peptide counts. Recently, a compendium of mRNA expre...
Anitha Kannan, Andrew Emili, Brendan J. Frey
122
Voted
BMCBI
2007
104views more  BMCBI 2007»
15 years 3 months ago
Joint mapping of genes and conditions via multidimensional unfolding analysis
Background: Microarray compendia profile the expression of genes in a number of experimental conditions. Such data compendia are useful not only to group genes and conditions base...
Katrijn Van Deun, Kathleen Marchal, Willem J. Heis...
137
Voted
BMCBI
2006
126views more  BMCBI 2006»
15 years 3 months ago
OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments
Background: Differentially expressed genes are typically identified by analyzing the variation between replicate measurements. These procedures implicitly assume that there are no...
Morgan N. Price, Adam P. Arkin, Eric J. Alm