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IPPS
2009
IEEE
15 years 11 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
IPPS
2009
IEEE
15 years 11 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
FDTC
2009
Springer
126views Cryptology» more  FDTC 2009»
15 years 10 months ago
WDDL is Protected against Setup Time Violation Attacks
—In order to protect crypto-systems against side channel attacks various countermeasures have been implemented such as dual-rail logic or masking. Faults attacks are a powerful t...
Nidhal Selmane, Shivam Bhasin, Sylvain Guilley, Ta...
CASES
2009
ACM
15 years 10 months ago
Fine-grain performance scaling of soft vector processors
Embedded systems are often implemented on FPGA devices and 25% of the time [2] include a soft processor— a processor built using the FPGA reprogrammable fabric. Because of their...
Peter Yiannacouras, J. Gregory Steffan, Jonathan R...
DATE
2008
IEEE
163views Hardware» more  DATE 2008»
15 years 10 months ago
Design flow for embedded FPGAs based on a flexible architecture template
Modern digital signal processing applications have an increasing demand for computational power while needing to preserve low power dissipation and high flexibility. For many appl...
B. Neumann, Thorsten von Sydow, Holger Blume, Tobi...