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110
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NN
2006
Springer
15 years 3 months ago
Self-organizing neural networks to support the discovery of DNA-binding motifs
Identification of the short DNA sequence motifs that serve as binding targets for transcription factors is an important challenge in bioinformatics. Unsupervised techniques from t...
Shaun Mahony, Panayiotis V. Benos, Terry J. Smith,...
134
Voted
BMCBI
2002
128views more  BMCBI 2002»
15 years 3 months ago
Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in euka
Background: Gene regulation in eukaryotes is mainly effected through transcription factors binding to rather short recognition motifs generally located upstream of the coding regi...
Michele Caselle, Ferdinando Di Cunto, Paolo Prover...
153
Voted
COLT
2010
Springer
15 years 1 months ago
Open Loop Optimistic Planning
We consider the problem of planning in a stochastic and discounted environment with a limited numerical budget. More precisely, we investigate strategies exploring the set of poss...
Sébastien Bubeck, Rémi Munos
132
Voted
TASLP
2011
14 years 10 months ago
Scale Transform in Rhythmic Similarity of Music
— As a special case of the Mellin transform, the scale transform has been applied in various signal processing areas, in order to get a signal description that is invariant to sc...
Andre Holzapfel, Yannis Stylianou
158
Voted
TCBB
2010
91views more  TCBB 2010»
14 years 10 months ago
SCS: Signal, Context, and Structure Features for Genome-Wide Human Promoter Recognition
This paper integrates the signal, context and structure features for genome-wide promoter recognition, which is critical in many DNA sequence analysis tasks. First, CpG islands ar...
Jia Zeng, Xiaoyu Zhao, Xiao-Qin Cao, Hong Yan