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ISMB
1997
14 years 11 months ago
Functional Prediction of B. subtilis Genes from Their Regulatory Sequences
In bacterial cells, gene expression is regulated by multiple sigma factors, each of which has its promoter specificity, according to their conditions. Thus, if we can discriminate...
Tetsushi Yada, Yasushi Totoki, Takahiro Ishii, Ken...
79
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PPAM
2007
Springer
15 years 3 months ago
New Data Structures for Matrices and Specialized Inner Kernels: Low Overhead for High Performance
Dense linear algebra codes are often expressed and coded in terms of BLAS calls. This approach, however, achieves suboptimal performance due to the overheads associated to such cal...
José R. Herrero
BMCBI
2005
133views more  BMCBI 2005»
14 years 9 months ago
Ab initio identification of putative human transcription factor binding sites by comparative genomics
Background: Understanding transcriptional regulation of gene expression is one of the greatest challenges of modern molecular biology. A central role in this mechanism is played b...
Davide Corà, Carl Herrmann, Christoph Diete...
BMCBI
2010
190views more  BMCBI 2010»
14 years 9 months ago
A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
Background: DNA signatures are distinct short nucleotide sequences that provide valuable information that is used for various purposes, such as the design of Polymerase Chain Reac...
Hsiao Ping Lee, Tzu-Fang Sheu, Chuan Yi Tang
PKDD
2009
Springer
155views Data Mining» more  PKDD 2009»
15 years 4 months ago
Dynamic Factor Graphs for Time Series Modeling
Abstract. This article presents a method for training Dynamic Factor Graphs (DFG) with continuous latent state variables. A DFG includes factors modeling joint probabilities betwee...
Piotr W. Mirowski, Yann LeCun