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BMCBI
2004
88views more  BMCBI 2004»
14 years 9 months ago
PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences
Background: This paper addresses the problem of discovering transcription factor binding sites in heterogeneous sequence data, which includes regulatory sequences of one or more g...
Saurabh Sinha, Mathieu Blanchette, Martin Tompa
75
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CORR
2010
Springer
162views Education» more  CORR 2010»
14 years 6 months ago
Cross-Composition: A New Technique for Kernelization Lower Bounds
We introduce a new technique for proving kernelization lower bounds, called cross-composition. A classical problem L cross-composes into a parameterized problem Q if an instance o...
Hans L. Bodlaender, Bart M. P. Jansen, Stefan Krat...
CVPR
2004
IEEE
15 years 11 months ago
Multiple Kernel Tracking with SSD
Kernel-based objective functions optimized using the mean shift algorithm have been demonstrated as an effective means of tracking in video sequences. The resulting algorithms com...
Gregory D. Hager, Maneesh Dewan, Charles V. Stewar...
ICPR
2008
IEEE
15 years 11 months ago
Fast protein homology and fold detection with sparse spatial sample kernels
In this work we present a new string similarity feature, the sparse spatial sample (SSS). An SSS is a set of short substrings at specific spatial displacements contained in the or...
Pai-Hsi Huang, Pavel P. Kuksa, Vladimir Pavlovic
KBSE
2003
IEEE
15 years 3 months ago
On the automatic evolution of an OS kernel using temporal logic and AOP
Automating software evolution requires both identifying precisely the affected program points and selecting the appropriate modification at each point. This task is particularly ...
Rickard A. Åberg, Julia L. Lawall, Mario S&u...