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CORR
2010
Springer
174views Education» more  CORR 2010»
14 years 10 months ago
Gaussian Process Bandits for Tree Search
We motivate and analyse a new Tree Search algorithm, based on recent advances in the use of Gaussian Processes for bandit problems. We assume that the function to maximise on the ...
Louis Dorard, John Shawe-Taylor
FPL
2008
Springer
150views Hardware» more  FPL 2008»
14 years 11 months ago
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
Betul Buyukkurt, Walid A. Najjar
QSIC
2007
IEEE
15 years 4 months ago
Towards Automatic Measurement of Probabilistic Processes
In this paper we propose a metric for finite processes in a probabilistic extension of CSP. The kernel of the metric corresponds to trace equivalence and most of the operators in...
Lin Song, Yuxin Deng, Xiaojuan Cai
BMCBI
2005
147views more  BMCBI 2005»
14 years 9 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
BMCBI
2006
172views more  BMCBI 2006»
14 years 10 months ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...