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TCS
2008
14 years 9 months ago
Detection of subtle variations as consensus motifs
We address the problem of detecting consensus motifs, that occur with subtle variations, across multiple sequences. These are usually functional domains in DNA sequences such as t...
Matteo Comin, Laxmi Parida
INFOSCALE
2006
ACM
15 years 3 months ago
Scalable hardware accelerator for comparing DNA and protein sequences
Abstract— Comparing genetic sequences is a well-known problem in bioinformatics. Newly determined sequences are being compared to known sequences stored in databases in order to ...
Philippe Faes, Bram Minnaert, Mark Christiaens, Er...
ICML
2010
IEEE
14 years 11 months ago
Hilbert Space Embeddings of Hidden Markov Models
Hidden Markov Models (HMMs) are important tools for modeling sequence data. However, they are restricted to discrete latent states, and are largely restricted to Gaussian and disc...
Le Song, Sajid M. Siddiqi, Geoffrey J. Gordon, Ale...
BMCBI
2008
93views more  BMCBI 2008»
14 years 10 months ago
Hybrid MM/SVM structural sensors for stochastic sequential data
In this paper we present preliminary results stemming from a novel application of Markov Models and Support Vector Machines to splice site classification of Intron-Exon and Exon-I...
Brian Roux, Stephen Winters-Hilt
VLSISP
2008
93views more  VLSISP 2008»
14 years 9 months ago
Performance and Energy Consumption Improvements in Microprocessor Systems Utilizing a Coprocessor Data-Path
The speedups and the energy reductions achieved in a generic single-chip microprocessor system by employing a high-performance data-path are presented. The data-path acts as a copr...
Michalis D. Galanis, Gregory Dimitroulakos, Costas...