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RECOMB
2000
Springer
15 years 1 months ago
Sequencing-by-hybridization at the information-theory bound: an optimal algorithm
In a recent paper (Preparata et al., 1999) we introduced a novel probing scheme for DNA sequencing by hybridization (SBH). The new gapped-probe scheme combines natural and univers...
Franco P. Preparata, Eli Upfal
ICMCS
1999
IEEE
105views Multimedia» more  ICMCS 1999»
15 years 2 months ago
Key Independent Watermark Detection
Many types of pseudo-random signals have been used to embed signatures as watermarks, with spread spectrum signal techniques used to recover the signature from the encrypted data....
Ron G. van Schyndel, Andrew Z. Tirkel, Imants D. S...
BMCBI
2005
126views more  BMCBI 2005»
14 years 9 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
JCB
2007
136views more  JCB 2007»
14 years 9 months ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
BMCBI
2010
153views more  BMCBI 2010»
14 years 10 months ago
Metamotifs - a generative model for building families of nucleotide position weight matrices
Background: Development of high-throughput methods for measuring DNA interactions of transcription factors together with computational advances in short motif inference algorithms...
Matias Piipari, Thomas A. Down, Tim J. P. Hubbard