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» Fast Algorithms for Top-k Approximate String Matching
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92
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DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
15 years 2 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
82
Voted
CORR
2008
Springer
128views Education» more  CORR 2008»
14 years 9 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
15 years 3 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...
IPPS
2009
IEEE
15 years 4 months ago
Input-independent, scalable and fast string matching on the Cray XMT
String searching is at the core of many security and network applications like search engines, intrusion detection systems, virus scanners and spam filters. The growing size of o...
Oreste Villa, Daniel G. Chavarría-Miranda, ...
ICDAR
1999
IEEE
15 years 1 months ago
Models and Algorithms for Duplicate Document Detection
This paper introduces a framework for clarifying and formalizing the duplicate document detection problem. Four distinct models are presented, each with a corresponding algorithm ...
Daniel P. Lopresti