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FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
14 years 1 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi
IFIPTCS
2000
15 years 1 months ago
An Index for Two Dimensional String Matching Allowing Rotations
We present an index to search a two-dimensional pattern of size m m in a two-dimensional text of size n n, even when the pattern appears rotated in the text. The index is based on ...
Kimmo Fredriksson, Gonzalo Navarro, Esko Ukkonen
SOFSEM
2007
Springer
15 years 3 months ago
Fast Approximate Point Set Matching for Information Retrieval
We investigate randomised algorithms for subset matching with spatial point sets—given two sets of d-dimensional points: a data set T consisting of n points and a pattern P consi...
Raphaël Clifford, Benjamin Sach
FCT
2003
Springer
15 years 2 months ago
Complexity of Approximating Closest Substring Problems
The closest substring problem, where a short string is sought that minimizes the number of mismatches between it and each of a given set of strings, is a minimization problem with ...
Patricia A. Evans, Andrew D. Smith
SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
14 years 9 days ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel