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» Fast Algorithms for Top-k Approximate String Matching
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STOC
1999
ACM
104views Algorithms» more  STOC 1999»
15 years 1 months ago
Fast Approximate PCPs
We investigate the question of when a prover can aid a verifier to reliably compute a function faster than if the verifier were to compute the function on its own. Our focus is ...
Funda Ergün, Ravi Kumar, Ronitt Rubinfeld
CSB
2005
IEEE
132views Bioinformatics» more  CSB 2005»
14 years 11 months ago
A Fast Shotgun Assembly Heuristic
Genome sequencing opened a new era in genetics allowing the study of genomes at the nucleotide level. However, the chosen method of sequencing produced large numbers of nucleotide...
Christopher Wilks, Sami Khuri
VLDB
2002
ACM
184views Database» more  VLDB 2002»
15 years 9 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
CPM
2001
Springer
211views Combinatorics» more  CPM 2001»
15 years 2 months ago
Fuzzy Hamming Distance: A New Dissimilarity Measure
Lempel Ziv Coding (Extended Abstract). . . . . . . . . . . . . . . . . . . . . . . 18 Shmuel Tomi Klein, Yair Wiseman Approximate Matching of Run-Length Compressed Strings . . . . ...
Abraham Bookstein, Shmuel T. Klein, Timo Raita
SPIRE
1998
Springer
15 years 1 months ago
Direct Pattern Matching on Compressed Text
We present a fast compression and decompression technique for natural language texts. The novelty is that the exact search can be done on the compressed text directly, using any k...
Edleno Silva de Moura, Gonzalo Navarro, Nivio Zivi...