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JCC
2008
117views more  JCC 2008»
15 years 2 months ago
FACTS: Fast analytical continuum treatment of solvation
: An efficient method for calculating the free energy of solvation of a (macro)molecule embedded in a continuum solvent is presented. It is based on the fully analytical evaluation...
Urs Haberthür, Amedeo Caflisch
WABI
2010
Springer
172views Bioinformatics» more  WABI 2010»
15 years 1 months ago
Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA
Abstract. Applied Biosystems’ SOLiD system offers a low-cost alternative to the traditional Sanger method of DNA sequencing. We introduce two main algorithms of mapping SOLiD’...
Miklós Csürös, Szilveszter Juhos,...
CORR
2010
Springer
90views Education» more  CORR 2010»
15 years 9 days ago
Fast Pseudo-Random Fingerprints
Abstract. We propose a method to exponentially speed up computation of various fingerprints, such as the ones used to compute similarity and rarity in massive data sets. Rather the...
Yoram Bachrach, Ely Porat
PC
2010
101views Management» more  PC 2010»
14 years 9 months ago
An efficient parallel implementation of the MSPAI preconditioner
We present an efficient implementation of the Modified SParse Approximate Inverse (MSPAI) preconditioner. MSPAI generalizes the class of preconditioners based on Frobenius norm mi...
Thomas Huckle, A. Kallischko, A. Roy, M. Sedlacek,...
SIAMCO
2010
97views more  SIAMCO 2010»
14 years 9 months ago
Real-Time Nonlinear Optimization as a Generalized Equation
Abstract. We establish results for the problem of tracking a time-dependent manifold arising in realtime optimization by casting this as a parametric generalized equation. We demon...
Victor M. Zavala, Mihai Anitescu