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JCPHY
2011
192views more  JCPHY 2011»
14 years 13 days ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
SIGMETRICS
1996
ACM
174views Hardware» more  SIGMETRICS 1996»
15 years 1 months ago
Embra: Fast and Flexible Machine Simulation
This paper describes Embra, a simulator for the processors, caches, and memory systems of uniprocessors and cache-coherent multiprocessors. When running as part of the SimOS simul...
Emmett Witchel, Mendel Rosenblum
ARITH
2001
IEEE
15 years 1 months ago
Computer Arithmetic-A Processor Architect's Perspective
The Instruction Set Architecture (ISA) of a programmable processor is the native languageof the machine. It defines the set of operations and resourcesthat are optimized for that ...
Ruby B. Lee
EGH
2003
Springer
15 years 2 months ago
A multigrid solver for boundary value problems using programmable graphics hardware
—We present a method for using programmable graphics hardware to solve a variety of boundary value problems. The time-evolution of such problems is frequently governed by partial...
Nolan Goodnight, Cliff Woolley, Gregory Lewin, Dav...
SC
2005
ACM
15 years 3 months ago
ClawHMMER: A Streaming HMMer-Search Implementation
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
Daniel Reiter Horn, Mike Houston, Pat Hanrahan