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2005
ACM
15 years 5 months ago
ClawHMMER: A Streaming HMMer-Search Implementation
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
Daniel Reiter Horn, Mike Houston, Pat Hanrahan
ICIP
2002
IEEE
16 years 1 months ago
Efficient video similarity measurement with video signature
The proliferation of video content on the web makes similarity detection an indispensable tool in web data management, searching, and navigation. In this paper, we propose a numbe...
Sen-Ching S. Cheung, Avideh Zakhor
BMCBI
2008
103views more  BMCBI 2008»
14 years 11 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
CN
2004
148views more  CN 2004»
14 years 11 months ago
Multiway range trees: scalable IP lookup with fast updates
In this paper, we introduce a new IP lookup scheme with worst-case search and update time of O(log n), where n is the number of prefixes in the forwarding table. Our scheme is base...
Priyank Ramesh Warkhede, Subhash Suri, George Varg...
BMCBI
2006
145views more  BMCBI 2006»
14 years 11 months ago
Querying the public databases for sequences using complex keywords contained in the feature lines
Background: High throughput technologies often require the retrieval of large data sets of sequences. Retrieval of EMBL or GenBank entries using keywords is easy using tools such ...
Olivier Croce, Michaël Lamarre, Richard Chris...