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BMCBI
2010
218views more  BMCBI 2010»
15 years 6 months ago
Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets
Background: Solving bioinformatics tasks often requires extensive computational power. Recent trends in processor architecture combine multiple cores into a single chip to improve...
Michael Scharfe, Rainer Pielot, Falk Schreiber
BMCBI
2010
149views more  BMCBI 2010»
15 years 6 months ago
KID - an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information o
Background: The amount of available biological information is rapidly increasing and the focus of biological research has moved from single components to networks and even larger ...
Stephanie Heinen, Bernhard Thielen, Dietmar Schomb...
PRL
2006
96views more  PRL 2006»
15 years 6 months ago
Fast codebook search algorithms based on tree-structured vector quantization
Tree-Structured Vector Quantization (TSVQ) is a highly efficient technique for locating an appropriate codeword for each input vector. The algorithm does not guarantee that the sel...
Chin-Chen Chang, Yu-Chiang Li, Jun-Bin Yeh
BIBM
2010
IEEE
156views Bioinformatics» more  BIBM 2010»
15 years 4 months ago
Truncation of protein sequences for fast profile alignment with application to subcellular localization
We have recently found that the computation time of homology-based subcellular localization can be substantially reduced by aligning profiles up to the cleavage site positions of s...
Man-Wai Mak, Wei Wang, Sun-Yuan Kung
IPPS
2010
IEEE
15 years 4 months ago
Inter-block GPU communication via fast barrier synchronization
The graphics processing unit (GPU) has evolved from a fixedfunction processor with programmable stages to a programmable processor with many fixed-function components that deliver...
Shucai Xiao, Wu-chun Feng