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» Fast Motif Search in Protein Sequence Databases
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VLDB
2000
ACM
121views Database» more  VLDB 2000»
15 years 3 months ago
Fast Time Sequence Indexing for Arbitrary Lp Norms
Fast indexing in time sequence databases for similarity searching has attracted a lot of research recently. Most of the proposals, however, typically centered around the Euclidean...
Byoung-Kee Yi, Christos Faloutsos
BMCBI
2010
101views more  BMCBI 2010»
14 years 12 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
BMCBI
2007
86views more  BMCBI 2007»
14 years 11 months ago
Tandem mass spectrometry data quality assessment by self-convolution
Background: Many algorithms have been developed for deciphering the tandem mass spectrometry (MS) data sets. They can be essentially clustered into two classes. The first performs...
Keng Wah Choo, Wai Mun Tham
73
Voted
BMCBI
2007
91views more  BMCBI 2007»
14 years 12 months ago
A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
Background: Odorant binding proteins (OBPs) are believed to shuttle odorants from the environment to the underlying odorant receptors, for which they could potentially serve as od...
Ganesan Pugalenthi, E. Ke Tang, Ponnuthurai N. Sug...
80
Voted
NAR
2006
88views more  NAR 2006»
14 years 11 months ago
RMD: a rice mutant database for functional analysis of the rice genome
Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap syste...
Jianwei Zhang, Caishun Li, Changyin Wu, Lizhong Xi...