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BMCBI
2006
92views more  BMCBI 2006»
14 years 11 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2008
323views more  BMCBI 2008»
14 years 12 months ago
A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
Background: Alternative splicing is an important gene regulation mechanism. It is estimated that about 74% of multi-exon human genes have alternative splicing. High throughput tan...
Fan Mo, Xu Hong, Feng Gao, Lin Du, Jun Wang, Gilbe...
BMCBI
2002
120views more  BMCBI 2002»
14 years 11 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
CIVR
2009
Springer
212views Image Analysis» more  CIVR 2009»
15 years 6 months ago
Video copy detection by fast sequence matching
Sequence matching techniques are effective for comparing two videos. However, existing approaches suffer from demanding computational costs and thus are not scalable for large-sca...
Mei-Chen Yeh, Kwang-Ting Cheng
SIGPRO
2008
104views more  SIGPRO 2008»
14 years 11 months ago
Macromolecular sequence analysis using multiwindow Gabor representations
Multiwindow Gabor representations highlight fingerprints suitable for indexing of macromolecules, based on their local periodic structures. This paper presents a technique for ana...
Nagesh K. Subbanna, Yehoshua Y. Zeevi