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» Fast Protein Structure Alignment
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ICML
2004
IEEE
16 years 17 days ago
A graphical model for protein secondary structure prediction
In this paper, we present a graphical model for protein secondary structure prediction. This model extends segmental semi-Markov models (SSMM) to exploit multiple sequence alignme...
Wei Chu, Zoubin Ghahramani, David L. Wild
3DPVT
2002
IEEE
121views Visualization» more  3DPVT 2002»
15 years 4 months ago
Analysis of Secondary Structure Elements of Proteins Using Indexing Techniques
In this paper we present a method for protein structure comparison that is based on indexing. Unlike most methods using indexing, ours does not use invariants of the C atoms of th...
Concettina Guerra, Stefano Lonardi, Giuseppe Zanot...
CPM
1993
Springer
154views Combinatorics» more  CPM 1993»
15 years 3 months ago
On Suboptimal Alignments of Biological Sequences
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re ect the correct biolog...
Dalit Naor, Douglas L. Brutlag
ISBRA
2010
Springer
15 years 6 months ago
"Master-Slave" Biological Network Alignment
d abstract), Nicola Ferraro, Luigi Palopoli, Simona Panni and Simona E. Rombo. Uncovering Hidden Phylogenetic Consensus d abstract), Nicholas Pattengale, Krister Swenson and Bernar...
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simo...
BMCBI
2008
62views more  BMCBI 2008»
14 years 12 months ago
A fast structural multiple alignment method for long RNA sequences
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi ...