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APBC
2007
110views Bioinformatics» more  APBC 2007»
14 years 11 months ago
Fast Structural Similarity Search Based on Topology String Matching
ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...
Sung-Hee Park, David Gilbert, Keun Ho Ryu
SIGMOD
2006
ACM
125views Database» more  SIGMOD 2006»
15 years 9 months ago
A non-linear dimensionality-reduction technique for fast similarity search in large databases
To enable efficient similarity search in large databases, many indexing techniques use a linear transformation scheme to reduce dimensions and allow fast approximation. In this re...
Khanh Vu, Kien A. Hua, Hao Cheng, Sheau-Dong Lang
ISMB
2003
14 years 11 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
ICDE
2006
IEEE
239views Database» more  ICDE 2006»
15 years 3 months ago
Grid Representation for Efficient Similarity Search in Time Series Databases
Widespread interest in time-series similarity search has made more in need of efficient technique, which can reduce dimensionality of the data and then to index it easily using a ...
Guifang Duan, Yu Suzuki, Kyoji Kawagoe
CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
15 years 1 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang