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» Fast and accurate algorithms for protein side-chain packing
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ICPR
2008
IEEE
14 years 7 months ago
Fast protein homology and fold detection with sparse spatial sample kernels
In this work we present a new string similarity feature, the sparse spatial sample (SSS). An SSS is a set of short substrings at specific spatial displacements contained in the or...
Pai-Hsi Huang, Pavel P. Kuksa, Vladimir Pavlovic
POPL
2003
ACM
14 years 6 months ago
Bitwidth aware global register allocation
Multimedia and network processing applications make extensive use of subword data. Since registers are capable of holding a full data word, when a subword variable is assigned a r...
Sriraman Tallam, Rajiv Gupta
BMCBI
2005
97views more  BMCBI 2005»
13 years 6 months ago
Clustering the annotation space of proteins
Background: Current protein clustering methods rely on either sequence or functional similarities between proteins, thereby limiting inferences to one of these areas. Results: Her...
Victor Kunin, Christos A. Ouzounis
JBCB
2008
71views more  JBCB 2008»
13 years 6 months ago
Using Indirect protein-protein Interactions for protein Complex Prediction
Protein complexes are fundamental for understanding principles of cellular organizations. Accurate and fast protein complex prediction from the PPI networks of increasing sizes ca...
Hon Nian Chua, Kang Ning, Wing-Kin Sung, Hon Wai L...
BMCBI
2008
102views more  BMCBI 2008»
13 years 6 months ago
Fast splice site detection using information content and feature reduction
Background: Accurate identification of splice sites in DNA sequences plays a key role in the prediction of gene structure in eukaryotes. Already many computational methods have be...
A. K. M. A. Baten, Saman K. Halgamuge, Bill C. H. ...