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» Fast functional simulation using branching programs
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IPPS
2009
IEEE
15 years 8 months ago
Fast development of dense linear algebra codes on graphics processors
—We present an application programming interface (API) for the C programming language that facilitates the development of dense linear algebra algorithms on graphics processors a...
M. Jesús Zafont, Alberto F. Martín, ...
SCFBM
2008
92views more  SCFBM 2008»
15 years 28 days ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
ISBI
2008
IEEE
16 years 2 months ago
Sift-based sequence registration and flow-based cortical vessel segmentation applied to high resolution optical imaging data
Several functional and biomedical imaging techniques rely on determining hemodynamic variables and their changes in large vascular networks. To do so at micro-vascular resolution ...
Ivo Vanzetta, Mickaël Péchaud, Renaud ...
POPL
2004
ACM
16 years 1 months ago
Global value numbering using random interpretation
We present a polynomial time randomized algorithm for global value numbering. Our algorithm is complete when conditionals are treated as non-deterministic and all operators are tr...
Sumit Gulwani, George C. Necula
BMCBI
2010
177views more  BMCBI 2010»
15 years 1 months ago
Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize mu...
Aydin Albayrak, Hasan H. Otu, Ugur O. Sezerman