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CSR
2006
Springer
13 years 10 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
ICASSP
2007
IEEE
14 years 20 days ago
Fast Search of Sequences with Complex Symbol Correlations using Profile Context-Sensitive HMMS and Pre-Screening Filters
Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
Byung-Jun Yoon, P. P. Vaidyanathan
HPCA
2011
IEEE
12 years 10 months ago
Mercury: A fast and energy-efficient multi-level cell based Phase Change Memory system
― Phase Change Memory (PCM) is one of the most promising technologies among emerging non-volatile memories. PCM stores data in crystalline and amorphous phases of the GST materia...
Madhura Joshi, Wangyuan Zhang, Tao Li
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
13 years 12 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
LCTRTS
2004
Springer
13 years 11 months ago
Finding effective compilation sequences
Most modern compilers operate by applying a fixed, program-independent sequence of optimizations to all programs. Compiler writers choose a single “compilation sequence”, or ...
L. Almagor, Keith D. Cooper, Alexander Grosul, Tim...