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BMCBI
2010
156views more  BMCBI 2010»
14 years 9 months ago
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
Background: High-throughput sequencing technologies, such as the Illumina Genome Analyzer, are powerful new tools for investigating a wide range of biological and medical question...
James H. Bullard, Elizabeth Purdom, Kasper D. Hans...
RECOMB
2001
Springer
15 years 9 months ago
Fast recovery of evolutionary trees with thousands of nodes
We present a novel distance-based algorithm for evolutionary tree reconstruction. Our algorithm reconstructs the topology of a tree with n leaves in O(n2 ) time using O(n) working...
Miklós Csürös
99
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INFOCOM
2012
IEEE
12 years 12 months ago
A statistical approach for target counting in sensor-based surveillance systems
—Target counting in sensor-based surveillance systems is an interesting task that potentially could have many important applications in practice. In such a system, each sensor ou...
Dengyuan Wu, Dechang Chen, Kai Xing, Xiuzhen Cheng
BMCBI
2010
121views more  BMCBI 2010»
14 years 7 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
CIBCB
2009
IEEE
14 years 10 months ago
An application of the metric access methods to the mass spectrometry data
Mass spectrometry is a very popular method for protein and peptide identification nowadays. Abundance of data generated in this way grows exponentially every year and although ther...
Jiri Novák, David Hoksza