Background: The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational bi...
In this paper we eliminate the need for parameter estimation associated with the set covering machine (SCM) by directly minimizing generalization error bounds. Firstly, we consider...
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
We describe a method for generating N-best configurations from part-based models, ensuring that they do not overlap according to some user-provided definition of overlap. We ext...
We describe an FPGA accelerator for the Kannan–Fincke– Pohst enumeration algorithm (KFP) solving the Shortest Lattice Vector Problem (SVP). This is the first FPGA implementati...