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SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
15 years 1 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...
BMCBI
2007
95views more  BMCBI 2007»
14 years 9 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao
ICDE
2010
IEEE
371views Database» more  ICDE 2010»
15 years 9 months ago
TASM: Top-k Approximate Subtree Matching
Abstract-- We consider the Top-k Approximate Subtree Matching (TASM) problem: finding the k best matches of a small query tree, e.g., a DBLP article with 15 nodes, in a large docum...
Nikolaus Augsten, Denilson Barbosa, Michael H. B&o...
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JEA
2008
97views more  JEA 2008»
14 years 9 months ago
Approximating the true evolutionary distance between two genomes
As more and more genomes are sequenced, evolutionary biologists are becoming increasingly interested in evolution at the level of whole genomes, in scenarios in which the genome e...
Krister M. Swenson, Mark Marron, Joel V. Earnest-D...
ICPR
2002
IEEE
15 years 10 months ago
A Windowed Weighted Approach for Approximate Cyclic String Matching
A method for measuring dissimilarities between cyclic strings is introduced. It computes a weighted mean between two (lower and upper) bounds of the exact cyclic edit distance, wh...
Ramón Alberto Mollineda, Enrique Vidal, Fra...