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BMCBI
2010
115views more  BMCBI 2010»
14 years 9 months ago
Multiconstrained gene clustering based on generalized projections
Background: Gene clustering for annotating gene functions is one of the fundamental issues in bioinformatics. The best clustering solution is often regularized by multiple constra...
Jia Zeng, Shanfeng Zhu, Alan Wee-Chung Liew, Hong ...
94
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BMCBI
2005
125views more  BMCBI 2005»
14 years 9 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
ICSE
2010
IEEE-ACM
14 years 11 months ago
Supporting developers with natural language queries
The feature list of modern IDEs is steadily growing and mastering these tools becomes more and more demanding, especially for novice programmers. Despite their remarkable capabili...
Michael Würsch, Giacomo Ghezzi, Gerald Reif, ...
73
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BMCBI
2010
156views more  BMCBI 2010»
14 years 9 months ago
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
Background: Functional genomic studies involving high-throughput sequencing and tiling array applications, such as ChIP-seq and ChIP-chip, generate large numbers of experimentally...
Mali Salmon-Divon, Heidi Dvinge, Kairi Tammoja, Pa...
97
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CASC
2006
Springer
128views Mathematics» more  CASC 2006»
15 years 1 months ago
New Domains for Applied Quantifier Elimination
We address various aspects of our computer algebra-based computer logic system redlog. There are numerous examples in the literature for successful applications of redlog to practi...
Thomas Sturm