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    NIPS
    2007
    121views Information Technology» more  NIPS 2007»
    Feature Selection Methods for Improving Protein Structure Prediction with Rosetta
    14 years 11 months ago
    Feature Selection Methods for Improving Protein Structure Prediction with Rosetta
    Download  books.nips.cc
    Rosetta is one of the leading algorithms for protein structure prediction today. It is a Monte Carlo energy minimization method requiring many random restarts to find structures ...
    Ben Blum, Michael I. Jordan, David Kim, Rhiju Das,...
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    BMCBI
    2008
    128views more  BMCBI 2008»
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    14 years 9 months ago
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    Download  www.biomedcentral.com
    Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
    Christopher Bystroff, Bobbie-Jo M. Webb-Robertson
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    BMCBI
    2008
    86views more  BMCBI 2008»
    Predicting protein linkages in bacteria: Which method is best depends on task
    14 years 9 months ago
    Predicting protein linkages in bacteria: Which method is best depends on task
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    Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
    Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...
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    RECOMB
    2007
    Springer
    190views Computational Biology» more  RECOMB 2007»
    Minimizing and Learning Energy Functions for Side-Chain Prediction
    15 years 10 months ago
    Minimizing and Learning Energy Functions for Side-Chain Prediction
    Download  www.cs.huji.ac.il
    Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
    Chen Yanover, Ora Schueler-Furman, Yair Weiss
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    BMCBI
    2010
    133views more  BMCBI 2010»
    Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical
    14 years 9 months ago
    Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical
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    Background: Many structural properties such as solvent accessibility, dihedral angles and helix-helix contacts can be assigned to each residue in a membrane protein. Independent s...
    Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paud...
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