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» Finding Gapped Motifs by a Novel Evolutionary Algorithm
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GECCO
2009
Springer
156views Optimization» more  GECCO 2009»
15 years 4 months ago
Insight knowledge in search based software testing
Software testing can be re-formulated as a search problem, hence search algorithms (e.g., Genetic Algorithms) can be used to tackle it. Most of the research so far has been of emp...
Andrea Arcuri
SIGMOD
2008
ACM
111views Database» more  SIGMOD 2008»
15 years 9 months ago
Discovering bucket orders from full rankings
Discovering a bucket order B from a collection of possibly noisy full rankings is a fundamental problem that relates to various applications involving rankings. Informally, a buck...
Jianlin Feng, Qiong Fang, Wilfred Ng
RECOMB
2006
Springer
15 years 9 months ago
Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in
Meiotic recombination is a fundamental biological event and one of the principal evolutionary forces responsible for shaping genetic variation within species. In addition to its fu...
Yun S. Song, Zhihong Ding, Dan Gusfield, Charles H...
BMCBI
2011
14 years 4 months ago
Motif-guided sparse decomposition of gene expression data for regulatory module identification
Background: Genes work coordinately as gene modules or gene networks. Various computational approaches have been proposed to find gene modules based on gene expression data; for e...
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggi...
BMCBI
2008
148views more  BMCBI 2008»
14 years 9 months ago
Discovering biclusters in gene expression data based on high-dimensional linear geometries
Background: In DNA microarray experiments, discovering groups of genes that share similar transcriptional characteristics is instrumental in functional annotation, tissue classifi...
Xiangchao Gan, Alan Wee-Chung Liew, Hong Yan