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ALGORITHMICA
2005
225views more  ALGORITHMICA 2005»
14 years 9 months ago
Better Alternatives to OSPF Routing
The current standard for intra-domain network routing, Open Shortest Path First (OSPF), suffers from a number of problems--the tunable parameters (the weights) are hard to optimiz...
Jessica H. Fong, Anna C. Gilbert, Sampath Kannan, ...
BMCBI
2005
134views more  BMCBI 2005»
14 years 9 months ago
Ancestral sequence alignment under optimal conditions
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Alexander K. Hudek, Daniel G. Brown 0001
BMCBI
2005
100views more  BMCBI 2005»
14 years 9 months ago
Scoredist: A simple and robust protein sequence distance estimator
Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from ...
Erik L. L. Sonnhammer, Volker Hollich
BMCBI
2005
152views more  BMCBI 2005»
14 years 9 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
TSP
2008
151views more  TSP 2008»
14 years 9 months ago
Reduce and Boost: Recovering Arbitrary Sets of Jointly Sparse Vectors
The rapid developing area of compressed sensing suggests that a sparse vector lying in a high dimensional space can be accurately and efficiently recovered from only a small set of...
Moshe Mishali, Yonina C. Eldar