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» Finding Sequential Patterns from Large Sequence Data
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KDD
2002
ACM
182views Data Mining» more  KDD 2002»
15 years 10 months ago
ANF: a fast and scalable tool for data mining in massive graphs
Graphs are an increasingly important data source, with such important graphs as the Internet and the Web. Other familiar graphs include CAD circuits, phone records, gene sequences...
Christopher R. Palmer, Phillip B. Gibbons, Christo...
PKDD
2009
Springer
134views Data Mining» more  PKDD 2009»
15 years 4 months ago
Mining Graph Evolution Rules
In this paper we introduce graph-evolution rules, a novel type of frequency-based pattern that describe the evolution of large networks over time, at a local level. Given a sequenc...
Michele Berlingerio, Francesco Bonchi, Björn ...
BMCBI
2007
109views more  BMCBI 2007»
14 years 9 months ago
A cis-regulatory logic simulator
Background: A major goal of computational studies of gene regulation is to accurately predict the expression of genes based on the cis-regulatory content of their promoters. The d...
Robert D. Zeigler, Jason Gertz, Barak A. Cohen
ASPLOS
2010
ACM
14 years 8 months ago
Best-effort semantic document search on GPUs
Semantic indexing is a popular technique used to access and organize large amounts of unstructured text data. We describe an optimized implementation of semantic indexing and docu...
Surendra Byna, Jiayuan Meng, Anand Raghunathan, Sr...
BMCBI
2008
161views more  BMCBI 2008»
14 years 9 months ago
Inferring gene expression dynamics via functional regression analysis
Background: Temporal gene expression profiles characterize the time-dynamics of expression of specific genes and are increasingly collected in current gene expression experiments....
Hans-Georg Müller, Jeng-Min Chiou, Xiaoyan Le...