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» Finding Transport Proteins in a General Protein Database
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NAR
2000
76views more  NAR 2000»
14 years 11 months ago
InBase, the Intein Database
InBase, the Intein Database (http://www.neb.com/neb/ inteins.html ), is a comprehensive on-line resource that includes the Intein Registry. Inteins are protein splicing elements t...
Francine B. Perler
80
Voted
BMCBI
2010
80views more  BMCBI 2010»
14 years 11 months ago
Sampling the conformation of protein surface residues for flexible protein docking
Background: The problem of determining the physical conformation of a protein dimer, given the structures of the two interacting proteins in their unbound state, is a difficult on...
Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nin...
BMCBI
2006
106views more  BMCBI 2006»
14 years 11 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
ADC
2006
Springer
158views Database» more  ADC 2006»
15 years 5 months ago
Dimensionality reduction in patch-signature based protein structure matching
Searching bio-chemical structures is becoming an important application domain of information retrieval. This paper introduces a protein structure matching problem and formulates i...
Zi Huang, Xiaofang Zhou, Dawei Song, Peter Bruza
BMCBI
2008
93views more  BMCBI 2008»
14 years 12 months ago
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens
Background: Prediction of bacterial virulent protein sequences has implications for identification and characterization of novel virulence-associated factors, finding novel drug/v...
Aarti Garg, Dinesh Gupta