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BMCBI
2007
216views more  BMCBI 2007»
14 years 11 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
DATE
2008
IEEE
136views Hardware» more  DATE 2008»
15 years 6 months ago
A Framework of Stochastic Power Management Using Hidden Markov Model
- The effectiveness of stochastic power management relies on the accurate system and workload model and effective policy optimization. Workload modeling is a machine learning proce...
Ying Tan, Qinru Qiu
KDD
2002
ACM
154views Data Mining» more  KDD 2002»
16 years 6 days ago
Mining Protein Contact Maps
The 3D conformation of a protein may be compactly represented in a symmetrical, square, boolean matrix of pairwise, inter-residue contacts, or "contact map". The contact...
Jingjing Hu, Xiaolan Shen, Yu Shao, Chris Bystroff...
APWEB
2004
Springer
15 years 5 months ago
Improving XML Query Performance Using Social Classes
In a state-of-the-art XML database, an XML query is evaluated as a sequence of structural joins in which positions of data nodes are used to perform each individual structural joi...
Weining Zhang, Douglas Pollok
BMCBI
2008
86views more  BMCBI 2008»
14 years 12 months ago
Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from in silico and in vivo data sets
Background: In plant mitochondria, the post-transcriptional RNA editing process converts C to U at a number of specific sites of the mRNA sequence and usually restores phylogeneti...
Ernesto Picardi, Carla Quagliariello