60 search results - page 6 / 12 » Finding motifs from all sequences with and without binding s... |
RECOMB
2005
Springer
15 years 10 months ago
2005
Springer
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
BMCBI
2005
14 years 9 months ago
2005
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
70
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RECOMB
2004
Springer
15 years 10 months ago
2004
Springer
The Gibbs sampling method has been widely used for sequence analysis after it was successfully applied to the problem of identifying regulatory motif sequences upstream of genes. ...
125
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JCB
2008
14 years 9 months ago
2008
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
73
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BMCBI
2006
14 years 9 months ago
2006
Background: Many DNA regulatory elements occur as multiple instances within a target promoter. Gibbs sampling programs for finding DNA regulatory elements de novo can be prohibiti...