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MBEES
2010
15 years 6 months ago
Towards Architectural Programming of Embedded Systems
: Integrating architectural elements with a modern programming language is essential to ensure a smooth combination of architectural design and programming. In this position statem...
Arne Haber, Jan Oliver Ringert, Bernhard Rumpe
BMCBI
2010
163views more  BMCBI 2010»
15 years 5 months ago
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity
Background: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeli...
Zong Hong Zhang, Hwee Kuan Lee, Ivana Mihalek
BMCBI
2010
130views more  BMCBI 2010»
15 years 5 months ago
Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors
Background: Sequence comparisons make use of a one-letter representation for amino acids, the necessary quantitative information being supplied by the substitution matrices. This ...
Karel Zimmermann, Jean-François Gibrat
133
Voted
BMCBI
2006
97views more  BMCBI 2006»
15 years 5 months ago
REEF: searching REgionally Enriched Features in genomes
Background: In Eukaryotic genomes, different features including genes are not uniformly distributed. The integration of annotation information and genomic position of functional D...
Alessandro Coppe, Gian Antonio Danieli, Stefania B...
160
Voted
BMCBI
2004
207views more  BMCBI 2004»
15 years 4 months ago
Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resen
Background: Transcriptional regulation is a key mechanism in the functioning of the cell, and is mostly effected through transcription factors binding to specific recognition moti...
Davide Corà, Ferdinando Di Cunto, Paolo Pro...