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SIAMSC
2008
140views more  SIAMSC 2008»
15 years 4 months ago
Newton-GMRES Preconditioning for Discontinuous Galerkin Discretizations of the Navier--Stokes Equations
We study preconditioners for the iterative solution of the linear systems arising in the implicit time integration of the compressible Navier-Stokes equations. The spatial discreti...
Per-Olof Persson, Jaime Peraire
RECOMB
2011
Springer
14 years 7 months ago
Rich Parameterization Improves RNA Structure Prediction
Motivation. Current approaches to RNA structure prediction range from physics-based methods, which rely on thousands of experimentally-measured thermodynamic parameters, to machin...
Shay Zakov, Yoav Goldberg, Michael Elhadad, Michal...
BMCBI
2006
179views more  BMCBI 2006»
15 years 4 months ago
Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
Background: In this study, we present a robust and reliable computational method for tag-togene assignment in serial analysis of gene expression (SAGE). The method relies on curre...
Rodrigo Malig, Cristian Varela, Eduardo Agosin, Fr...
BMCBI
2007
111views more  BMCBI 2007»
15 years 4 months ago
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...
Mamoru Kato, Tatsuhiko Tsunoda
BMCBI
2005
105views more  BMCBI 2005»
15 years 4 months ago
Secondary structure assignment that accurately reflects physical and evolutionary characteristics
Background: Secondary structure is used in hierarchical classification of protein structures, identification of protein features, such as helix caps and loops, for fold recognitio...
Maria Vittoria Cubellis, Fabien Cailliez, Simon C....