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BMCBI
2005
147views more  BMCBI 2005»
15 years 3 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
DEBU
1999
109views more  DEBU 1999»
15 years 3 months ago
Data Management for XML: Research Directions
This paper is a July 1999 snapshot of a "whitepaper" that I've been working on. The purpose of the whitepaper, which I initially drafted in April 1999, was to formu...
Jennifer Widom
INTERNET
2010
119views more  INTERNET 2010»
15 years 1 months ago
A Chat Application in Lift
s the HTTP request–response cycle rather than wrapping HTTP concepts in APIs. This means you put HTML element definition and action in the same place: var name = "" SHt...
David Pollak, Steve Vinoski
145
Voted
TC
2010
15 years 1 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
147
Voted
BMCBI
2010
121views more  BMCBI 2010»
15 years 25 days ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...