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» Fixed-Parameter Algorithms in Phylogenetics
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55
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IPL
2006
72views more  IPL 2006»
14 years 10 months ago
Structure and linear time recognition of 3-leaf powers
A graph G is the k-leaf power of a tree T if its vertices are leaves of T such that two vertices are adjacent in G if and only if their distance in T is at most k. Then T is the k...
Andreas Brandstädt, Van Bang Le
73
Voted
BMCBI
2007
86views more  BMCBI 2007»
14 years 10 months ago
Detecting microsatellites within genomes: significant variation among algorithms
Background: Microsatellites are short, tandemly-repeated DNA sequences which are widely distributed among genomes. Their structure, role and evolution can be analyzed based on exh...
Sébastien Leclercq, Eric Rivals, Philippe J...
99
Voted
IPL
2010
134views more  IPL 2010»
14 years 5 months ago
Parameterized algorithm for eternal vertex cover
In this paper we initiate the study of a "dynamic" variant of the classical Vertex Cover problem, the Eternal Vertex Cover problem introduced by Klostermeyer and Mynhard...
Fedor V. Fomin, Serge Gaspers, Petr A. Golovach, D...
CCECE
2006
IEEE
15 years 4 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...
84
Voted
RECOMB
2007
Springer
15 years 4 months ago
Parts of the Problem of Polyploids in Rearrangement Phylogeny
Abstract. Genome doubling simultaneously doubles all genetic markers. Genome rearrangement phylogenetics requires that all genomes analyzed have the same set of orthologs, so that ...
Chunfang Zheng, Qian Zhu, David Sankoff