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» Fixed-Parameter Algorithms in Phylogenetics
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CISS
2008
IEEE
15 years 20 hour ago
Network tomography based on additive metrics
Inference of the network structure (e.g., routing topology) and dynamics (e.g., traffic matrices, link performance) is an important component in many network design and management ...
Jian Ni, Sekhar Tatikonda
GECCO
2005
Springer
100views Optimization» more  GECCO 2005»
15 years 3 months ago
Evolutionary tree genetic programming
We introduce a clustering-based method of subpopulation management in genetic programming (GP) called Evolutionary Tree Genetic Programming (ETGP). The biological motivation behin...
Ján Antolík, William H. Hsu
94
Voted
TCBB
2010
144views more  TCBB 2010»
14 years 5 months ago
Querying Graphs in Protein-Protein Interactions Networks Using Feedback Vertex Set
Recent techniques increase rapidly the amount of our knowledge on interactions between proteins. The interpretation of these new information depends on our ability to retrieve kno...
Guillaume Blin, Florian Sikora, Stéphane Vi...
TCBB
2010
166views more  TCBB 2010»
14 years 8 months ago
Approximate Maximum Parsimony and Ancestral Maximum Likelihood
— We explore the maximum parsimony (MP) and ancestral maximum likelihood (AML) criteria in phylogenetic tree reconstruction. Both problems are NP hard, so we seek approximate sol...
Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport
BMCBI
2011
14 years 4 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...