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BMCBI
2010
135views more  BMCBI 2010»
14 years 10 months ago
Integration and visualization of systems biology data in context of the genome
Background: High-density tiling arrays and new sequencing technologies are generating rapidly increasing volumes of transcriptome and protein-DNA interaction data. Visualization a...
J. Christopher Bare, Tie Koide, David J. Reiss, Da...
HPDC
2010
IEEE
14 years 11 months ago
Biocompute: towards a collaborative workspace for data intensive bio-science
The explosion of data in the biological community demands the development of more scalable and flexible portals for bioinformatic computation. To address this need, we put forth c...
Rory Carmichael, Patrick Braga-Henebry, Douglas Th...
PVLDB
2008
182views more  PVLDB 2008»
14 years 9 months ago
SCOPE: easy and efficient parallel processing of massive data sets
Companies providing cloud-scale services have an increasing need to store and analyze massive data sets such as search logs and click streams. For cost and performance reasons, pr...
Ronnie Chaiken, Bob Jenkins, Per-Åke Larson,...
BMCBI
2010
95views more  BMCBI 2010»
14 years 10 months ago
Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso
Background: Single nucleotide polymorphism (SNP) based association studies aim at identifying SNPs associated with phenotypes, for example, complex diseases. The associated SNPs m...
Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Weichua...
SIGMOD
2006
ACM
116views Database» more  SIGMOD 2006»
15 years 10 months ago
Extensible optimization in overlay dissemination trees
We introduce XPORT, a profile-driven distributed data dissemination system that supports an extensible set of data types, profile types, and optimization metrics. XPORT efficientl...
Olga Papaemmanouil, Yanif Ahmad, Ugur Çetin...