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HPDC
2010
IEEE
15 years 28 days ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
SIGMOD
2010
ACM
201views Database» more  SIGMOD 2010»
15 years 1 days ago
I4E: interactive investigation of iterative information extraction
Information extraction systems are increasingly being used to mine structured information from unstructured text documents. A commonly used unsupervised technique is to build iter...
Anish Das Sarma, Alpa Jain, Divesh Srivastava
BMCBI
2010
112views more  BMCBI 2010»
14 years 12 months ago
PhenoFam-gene set enrichment analysis through protein structural information
Background: With the current technological advances in high-throughput biology, the necessity to develop tools that help to analyse the massive amount of data being generated is e...
Maciej Paszkowski-Rogacz, Mikolaj Slabicki, M. Ter...
BMCBI
2010
145views more  BMCBI 2010»
14 years 12 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...
BMCBI
2008
130views more  BMCBI 2008»
14 years 12 months ago
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
Kevin Brick, Elisabetta Pizzi