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» Flexible and efficient IR using array databases
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BMCBI
2007
139views more  BMCBI 2007»
14 years 10 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
BMCBI
2008
242views more  BMCBI 2008»
14 years 10 months ago
annot8r: GO, EC and KEGG annotation of EST datasets
Background: The expressed sequence tag (EST) methodology is an attractive option for the generation of sequence data for species for which no completely sequenced genome is availa...
Ralf Schmid, Mark L. Blaxter
SIGMOD
2004
ACM
184views Database» more  SIGMOD 2004»
15 years 10 months ago
CORDS: Automatic Discovery of Correlations and Soft Functional Dependencies
The rich dependency structure found in the columns of real-world relational databases can be exploited to great advantage, but can also cause query optimizers--which usually assum...
Ihab F. Ilyas, Volker Markl, Peter J. Haas, Paul B...
BMCBI
2007
149views more  BMCBI 2007»
14 years 9 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
VLDB
2005
ACM
152views Database» more  VLDB 2005»
15 years 10 months ago
Composing, optimizing, and executing plans for bioinformatics web services
The emergence of a large number of bioinformatics datasets on the Internet has resulted in the need for flexible and efficient approaches to integrate information from multiple bio...
Snehal Thakkar, José Luis Ambite, Craig A. Knoblo...