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BMCBI
2008
98views more  BMCBI 2008»
15 years 6 months ago
GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach
Background: Combinatorial regulation of transcription factors (TFs) is important in determining the complex gene expression patterns particularly in higher organisms. Deciphering ...
Li Shen, Jie Liu, Wei Wang
BIBM
2009
IEEE
172views Bioinformatics» more  BIBM 2009»
15 years 11 months ago
Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis
—A comprehensive understanding of cancer progression may shed light on genetic and molecular mechanisms of oncogenesis, and it may provide much needed information for effective d...
Yoon Soo Pyon, Jing Li
GECCO
2006
Springer
130views Optimization» more  GECCO 2006»
15 years 10 months ago
Pairwise sequence comparison for fitness evaluation in evolutionary structural software testing
Evolutionary algorithms are among the metaheuristic search methods that have been applied to the structural test data generation problem. Fitness evaluation methods play an import...
H. Turgut Uyar, A. Sima Etaner-Uyar, A. Emre Harma...
OL
2011
332views Neural Networks» more  OL 2011»
15 years 1 months ago
A robust implementation of a sequential quadratic programming algorithm with successive error restoration
We consider sequential quadratic programming (SQP) methods for solving constrained nonlinear programming problems. It is generally believed that SQP methods are sensitive to the a...
Klaus Schittkowski
JMLR
2006
115views more  JMLR 2006»
15 years 6 months ago
Structured Prediction, Dual Extragradient and Bregman Projections
We present a simple and scalable algorithm for maximum-margin estimation of structured output models, including an important class of Markov networks and combinatorial models. We ...
Benjamin Taskar, Simon Lacoste-Julien, Michael I. ...